<html><body><title>AT3G12910.1</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u321291001000i/AT3G12910.1.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u321291001000i/AT3G12910.1.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u321291001000i/AT3G12910.1.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u127064001000i">AT1G70640.1</a></td><td>0.912595</td><td>octicosapeptide/Phox/Bem1p (PB1) domain-containing protein</td><td>OMAT1P020120</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u526313001000i">AT5G63130.1</a></td><td>0.849642</td><td>octicosapeptide/Phox/Bem1p (PB1) domain-containing protein</td><td>OMAT5P019310</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u120156002000i">AT1G01560.2</a></td><td>0.842657</td><td>ATMPK11</td><td>OMAT1P000270</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u127013001000i">AT1G70130.1</a></td><td>0.835496</td><td>lectin protein kinase, putative</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u420673801000i">AT4G06738.1</a></td><td>0.825882</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u126276601000i">AT1G62766.1</a></td><td>0.822741</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u121742001000i">AT1G17420.1</a></td><td>0.794882</td><td>LOX3</td><td>OMAT1P006430</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u421828001000i">AT4G18280.1</a></td><td>0.791095</td><td>glycine-rich cell wall protein-related</td><td>OMAT4P005500</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u320183001000i">AT3G01830.1</a></td><td>0.784993</td><td>calmodulin-related protein, putative</td><td>OMAT3P000420</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u524608001000i">AT5G46080.1</a></td><td>0.78263</td><td>protein kinase family protein</td><td>OMAT5P111530</td><td>-</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u125972201000i">AT1G59722.1</a></td><td>-0.720287</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u323065001000i">AT3G30650.1</a></td><td>-0.716249</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u120330001000i">AT1G03300.1</a></td><td>-0.709672</td><td>agenet domain-containing protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u526363001000i">AT5G63630.1</a></td><td>-0.701032</td><td>DEAD box RNA helicase, putative</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u221127001000i">AT2G11270.1</a></td><td>-0.69779</td><td>citrate synthase-related</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u525764001000i">AT5G57640.1</a></td><td>-0.688286</td><td>FUNCTIONS IN: molecular_function unknown</td><td>-</td><td>-</td><td>OMAT5P115140</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u126292001000i">AT1G62920.1</a></td><td>-0.686091</td><td>FUNCTIONS IN: molecular_function unknown</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u221409001000i">AT2G14090.1</a></td><td>-0.68423</td><td>pseudogene, expressed protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u224218001000i">AT2G42180.1</a></td><td>-0.662106</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u525733001000i">AT5G57330.1</a></td><td>-0.661489</td><td>aldose 1-epimerase family protein</td><td>OMAT5P017140</td><td>-</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u321291001000i/AT3G12910.1-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.00e-06</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.00e-06 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FF69B4><td>B</td><td>4</td><td>GO:0009414</td><td>response to water deprivation</td><td>11/200</td><td>9.58</td><td>2.17e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>4</td><td>GO:0009415</td><td>response to water</td><td>11/200</td><td>9.15</td><td>3.66e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>5</td><td>GO:0009737</td><td>response to abscisic acid stimulus</td><td>12/200</td><td>7.10</td><td>1.84e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>4</td><td>GO:0071495</td><td>cellular response to endogenous stimulus</td><td>12/200</td><td>7.10</td><td>1.84e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>3</td><td>GO:0009719</td><td>response to endogenous stimulus</td><td>20/200</td><td>3.88</td><td>6.10e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>4</td><td>GO:0010033</td><td>response to organic substance</td><td>23/200</td><td>3.44</td><td>7.09e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>3</td><td>GO:0042221</td><td>response to chemical stimulus</td><td>31/200</td><td>2.72</td><td>1.23e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>5</td><td>GO:0071310</td><td>cellular response to organic substance</td><td>12/200</td><td>5.73</td><td>2.20e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>4</td><td>GO:0070887</td><td>cellular response to chemical stimulus</td><td>12/200</td><td>5.28</td><td>5.62e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>4</td><td>GO:0009725</td><td>response to hormone stimulus</td><td>17/200</td><td>3.60</td><td>1.47e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>3</td><td>GO:0006950</td><td>response to stress</td><td>29/200</td><td>2.34</td><td>6.55e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0023033</td><td>signaling pathway</td><td>13/200</td><td>3.85</td><td>8.83e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0051716</td><td>cellular response to stimulus</td><td>15/200</td><td>3.39</td><td>1.08e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0006464</td><td>protein modification process</td><td>23/200</td><td>2.21</td><td>1.25e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0043412</td><td>macromolecule modification</td><td>23/200</td><td>2.03</td><td>4.41e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0009628</td><td>response to abiotic stimulus</td><td>17/200</td><td>2.29</td><td>4.97e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0044267</td><td>cellular protein metabolic process</td><td>33/200</td><td>1.62</td><td>2.06e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0019538</td><td>protein metabolic process</td><td>36/200</td><td>1.56</td><td>2.53e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0006796</td><td>phosphate metabolic process</td><td>14/200</td><td>2.11</td><td>2.92e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0006793</td><td>phosphorus metabolic process</td><td>14/200</td><td>2.11</td><td>2.95e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>abscisic</td><td>-</td><td>10/200</td><td>7.14</td><td>1.92e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>transcriptional</td><td>-</td><td>11/200</td><td>4.56</td><td>6.41e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>threonine</td><td>-</td><td>19/200</td><td>2.53</td><td>6.99e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>serine</td><td>-</td><td>21/200</td><td>2.36</td><td>9.29e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>response</td><td>-</td><td>34/200</td><td>1.90</td><td>9.73e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>subfamily</td><td>-</td><td>11/200</td><td>3.41</td><td>1.08e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>stimulus</td><td>-</td><td>11/200</td><td>2.55</td><td>1.41e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>kinase</td><td>-</td><td>20/200</td><td>1.89</td><td>2.15e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>ipr011009</td><td>-</td><td>14/200</td><td>2.17</td><td>2.27e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>ipr017441</td><td>-</td><td>10/200</td><td>2.33</td><td>4.17e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>amino</td><td>-</td><td>16/200</td><td>1.86</td><td>6.09e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>ipr017442</td><td>-</td><td>11/200</td><td>2.09</td><td>7.04e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>member</td><td>-</td><td>19/200</td><td>1.73</td><td>7.04e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>
AT3G12910.1
with_OMAT_gene
0.61667300000000002669